NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206126_10002233

Scaffold Ga0206126_10002233


Overview

Basic Information
Taxon OID3300020595 Open in IMG/M
Scaffold IDGa0206126_10002233 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21571
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070114Metagenome / Metatranscriptome123Y
F080236Metagenome / Metatranscriptome115N
F090610Metagenome / Metatranscriptome108N
F103186Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0206126_1000223334F090610N/AMHKTWRLYLLDNKSLTEISKLLNVSKNKLKTQYGLK
Ga0206126_1000223340F070114N/AMELHRALENKKLYEIDQSFSEDAWHAFHQADINSQDDFYDFFHEWIDNACIYTSDCESILSGNMEYCFNEHDVYGQPNNVAQAAFACLYDYLYFSPDTVTWAEMEHVLHEADTKN
Ga0206126_1000223342F080236N/AMNNIYDKKFELYLVTKGYDLDTISLNECLKEIKIWKKNTTNA
Ga0206126_1000223345F103186N/AMRFPKSFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIEICEKELNKLL
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