NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210401_10014324

Scaffold Ga0210401_10014324


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10014324 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7679
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010632Metagenome / Metatranscriptome301Y
F025872Metagenome / Metatranscriptome200Y
F038313Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1001432410F010632GGAMSDEDKANQLSDQVGKLMVKCVNLLTAQDPLSLDYCKQQRDLADQYPPHMRLVDKMMAHDEYGIALAAFDHKQEALEEFDVEVGLVPKAVKPGSAEWSTAYWHRAMIYTQMGQMDKADRDYRAAEENFRKPSPTADSTSIEKKRRAILRQHAALLEKEGKTQAAHQLLQEAAK
Ga0210401_100143244F038313GGAGGVNARILIIGDDPVLLRTRAEMLRDWQITAVSSREAAQALLTRNYDLLIFSQTVREPLARRLIAQARDLDPNTRVLAIYTEEDRKLGSSAYEVDLHNPGGLRLAVERMLAWRSDARKPT
Ga0210401_100143249F025872GGAGLPLFRARAVGGAAAFLLGVVFAHGQVSDCTRLLQAQDAQAVAACKAQLDEAEKAPASERMGRIVANDEYGVALLAIAHDPKQSLEPFNRGIAILPSSTVKHDSLQYAVEFWHRATAYQQLKQWEQAAADLRTAEDTLTRAIAASGSDNAAAEHFRKLRQSVRKQRADVLEHQGRHQEAEKVLATQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.