NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10007234

Scaffold Ga0210401_10007234


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10007234 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11162
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000272Metagenome / Metatranscriptome1408Y
F000801Metagenome / Metatranscriptome886Y
F001854Metagenome / Metatranscriptome626Y
F077727Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000723410F077727GGAGMLPAKSSSSCSAPAKIWVGAFLGRMLLKPSGATKGDWMLGLLLGLLILTIVGFIPYLGGLVCRGVVCLGLGAFAGQLYRSSRLVLTA
Ga0210401_1000723414F001854GAGGMSKCVNEHNRGKRVMPSRLTKRRGTSRWEWRFLSLKTLLFVIFFLCFAPGVVALSPDAPNQSPKTSADIGARLTTIMGTVLEDGDKLRFVTEQRAWKVDNPGLLKGHEGHYVHAAAYIYPDKNLIHIIKVKTASARETREADIK
Ga0210401_1000723420F000801AGGAGMAAQAWTVKQLIEALKKFPLDAKVFYEMGPNGTGTIGKAQYVKARGEDDQLGVLLDR
Ga0210401_100072344F000272AGGAGGMSQTVLDRTTERIAESARQASRATSAVADAIIEDGVGVVKRAAKQGGDAAEEFLNDTTQRIQRHPVLTVAATFAVGFTAGAFIGWMIKRR
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Institute for Fundamental Biomedical Research
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