NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10000611

Scaffold Ga0210401_10000611


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10000611 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43486
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002530Metagenome / Metatranscriptome551Y
F025792Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000061126F002530N/AMSRDDEDRILHGLYYYRENIDEDVQVTSEQLLWLAMHPLREGEAWNKEGKLQSMDASEFPEEIRSKLITAKLELPLRYLQYRRLITYARRSDGMLYAAVTFAGADRAIRLHTRRGRMDLWYREHRDGIIGVTITILISFITALITVLAIGKMLRP
Ga0210401_1000061134F025792AGTAGMETMNSNYRRLIAGTLAAGACLLGAVGAAQTPEQQKMWDAQRAQAQADEKVRAEKLAAQRAARKADPMAWVRTLNPLSAGGWQFRSVAPDGSWASFSTEHQLKRSGHLVTAWLREEYPEPQRSGSGGVYLSYVEKIQYDCGNERARALLIIYYSENNITGSEESEATDVKQAAWVPIVPGTPSDNIYEWVCQTANLHNK
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