NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10000099

Scaffold Ga0210401_10000099


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10000099 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97602
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (72.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007083Metagenome / Metatranscriptome358Y
F067009Metagenome / Metatranscriptome126Y
F103831Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000009946F103831AGGMLPLILLAASLLHSQKASMECVDTGASIAATETEQVRGPRGATAVLMVSSADDHSKNSHDCMAGYKLVVAPVPGGAPVEADIIASDGDYGRTLSLRLSGFSQDGKRVLGILAEGGKYPTILLFDYHEGGGPVQIIDLKMQFARVAPPGCSQTLEVSGTTASGAIVVESNSVKSCGSSRRWLVNAAGSKAQPLPQSSAILVLYELKDSAP
Ga0210401_1000009959F007083AGGAGGMRNYFFPLTAALALLIACSSQAAEKPRPAQGNQNQPKKVWTNEDMDQLRARGLISIVGQEAPAPAAQAPAAAVEATFPVYESRLDDPEWYADQAASLQAELDQRQAALLEQQAAIAQAVNQRITTPGLALDKDGPGMTPAEGLANLEAQVQEVQNQLDELSDLARQHDIDPGVLRG
Ga0210401_1000009982F067009GAGMPGGVVIEAGPSVYVTGANFANGTFVETGFVGTWVSEGHGNFVAHLIANLSDPPVSKGTTIGTENLTFRFHIENGKNGKELKGTLEGVFLDMEGNTLSQMPAGLTWDAIPLTITSNGYN
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