NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_11007026

Scaffold Ga0210395_11007026


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_11007026 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004243Metagenome / Metatranscriptome447Y
F017169Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_110070261F017169N/AGNVFYAVGTEDFAEVDQIGSFASQTYGGGLRFRFTPRQDVTGYAAFQQRTQDRAETSFGFTYGIRF
Ga0210395_110070262F004243GAGMAFDSDFFHKFAPSVLVFKAIIWAIAADFVLLAFILLRRNYRKRYFRKRDRRVFELRQQWDVLISGEIPFETWRTNPFDRRIIEDMALDAFEAAPADESARLLRFLRAAGLIEKRIFEARTLKGWRRRSALVALGRTRAPEGI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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