NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10874845

Scaffold Ga0210395_10874845


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10874845 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)668
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F017007Metagenome / Metatranscriptome243Y
F064567Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_108748451F017007N/ANLLGRTLGIPAELLNVRANASRSNGGGFFSALGSGLGSTLGALPGAFF
Ga0210395_108748452F000624AGGAMPASWFAILAAIVSGAVQFVVFLRWLHRRMRNDEIVSAFVRDIAANHLPHIYTALHEIAKRQGIELPETPMVRFVDLNGHRRNN
Ga0210395_108748453F064567GAGVNPPSQLVTLACRAAATHSLDPALVCAVVEQESAWNPWAMRYEPVFFGKYVAPLYTSNKI
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