NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10001015

Scaffold Ga0210395_10001015


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10001015 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21800
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000323Metagenome / Metatranscriptome1300Y
F003117Metagenome / Metatranscriptome506Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_100010154F003117N/AMPDRKLRIVRFIGSTPSTAFCDVCKLAFRTQRELITDADKAKAQLQSDFDKHECRPEEGAVNDALNHRR
Ga0210395_100010157F000269N/AMGNYSKSRSRTCALFLSLVLPVTLAGASEETTAKPTDVPATVIAHLTLPQATGSQMLLQREDTKQYLYVQQAAKQGFMVVDVSRPDKPSLLKRTAESNQATSGNLQMVSPDVAIAEAPEKTPATLTSNNHPTETVRVLDLTDPRNPKTLETFNKVTSILSDGRHGLIYLTNDEGLWVLRYNRPALLEPAKKKPPCDSESPIMAMPPDCE
Ga0210395_100010158F000323AGGAGMRTLLFALLFSGVFLLAQDSAPSNAKDSKGQLTVQGCVSRSSGDYILMRQDPGVTYELQATRKTKLHQYLGKQVEVTGTESPSMSTSSDTSARAGSPSPVTLSITSIRIVAQECQAH
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