NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000346

Scaffold Ga0210395_10000346


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000346 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36253
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001920Metagenome / Metatranscriptome617Y
F013101Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_1000034618F001920AGGAGMSESRSGKSLALDWRGPLLAAGMFAAVFAILLLMAHQNQSNTSDMGSSLREDPYGTSLLFDSYAHAGYRVNRSQDEDSLADQDGPKTTAFFIGDFGFGFPENEGENTRAADKFLAQLEDFLSRGGRVVLIEHAGKLRSKSQDWEVENNWSHPDQPSGPTWVSPDLSVMPTGSEMMFLNADIPWLKTDSHWTALYAGTVKSDVKTNGSMRVYMAMRKVGKGELVAVSQEWFLVNETIKNHPNPVLLDFLTGGRPGIWVDEALHGLQQDKGVLWLVQRYRLQPALMLFWGALLALLWSMSGDLMRRPARDQIAQIMRYGESAGVAGRRLLQRSLAAELVVAECWNQFRRRSPQDAQAISADPRFAQRLRAALQLLPLAGYRELSQLIAERRASAKGLAHVARHSGDSSTNAEKRIPKEERFA
Ga0210395_100003463F013101GAGGMVLANLAFLRKEIVSEFRVLYLAGVDLHFGKAKELFNALVAVPLGSDASGDLLRYFQIRRAWDLGRYGSLTEADLIFRNQAKMRFTGQRFEYLYRGWKVGRVTETSIVQEFGGSKHDVRAHFATEVLRRVGVPAQEPAGKE
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