| Basic Information | |
|---|---|
| Taxon OID | 3300020582 Open in IMG/M |
| Scaffold ID | Ga0210395_10000020 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 243719 |
| Total Scaffold Genes | 211 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 133 (63.03%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000426 | Metagenome / Metatranscriptome | 1154 | Y |
| F000534 | Metagenome / Metatranscriptome | 1044 | Y |
| F001318 | Metagenome / Metatranscriptome | 724 | Y |
| F003708 | Metagenome / Metatranscriptome | 473 | Y |
| F005420 | Metagenome / Metatranscriptome | 401 | Y |
| F042478 | Metagenome / Metatranscriptome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210395_1000002015 | F005420 | AGGCGG | MKRGQISVLAWAMVAMALPLLGQSTAPTIYAESFRQGSTRITEETFDATLTPDDATYRERIKDALGNDRYELTISPQVMEGGKEITSWRVRLRDLHHNIYSNILLADQQPSPDAKNNLWWLNPNRFSSVPIRAKRIVKVDGFYVVMQVKDLHFTPLDSPYLDSMAVHFGFSNSDPRTVR |
| Ga0210395_10000020171 | F003708 | AGGA | MKLVTLILPTILLLVLSSAIPPAASGVRTAPAPQEPEPSALSTQVTIEPGLSIGPLKLGDTRERALELFPKKEEDLEWQNTCGTTLDWVDAQNPTGHGDLFIRLKKGKIFQIESSTTRFHTAEGITTFDHGDKVANAYKDMRAFTLLTPPAPALGDRPLVFWIDKKKGIAFAFAYYPAEHKRYLYKIIVFEPNKTFCPEEETTSSPKWQPIKSYALEPPPELAPNL |
| Ga0210395_10000020185 | F000426 | AGGAG | MKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAENDDDDNGVLAEVDETSLLEGDAMSAKAGAGSGSSASSSKAPRPAAPRWP |
| Ga0210395_10000020202 | F001318 | GGAGG | MKKFAWLLAIPVLISLAGAQVSQSLNPQGPGPQSLSSQNTVSQGSGSPSSDHDAGSGDRMFFPHDMLWGWAQLDLAPPHNEIDPNLCSGDAAANGGINDPCSLFARYMLSGILEVRPFGRGVLRRFMVYGAPTFLFGKTIPKTLYTWSPDAIGIEHSWGVGIYLNKGFEFRVTQHFLFDRLGARDKNLGPADLGNNGPWGRYVTVGVRKTFGTRRW |
| Ga0210395_10000020203 | F000534 | AGGA | MPQEISVSYQAIKSKVYRLIDSLVVGEKTESEVQESIRRWWALIHPADRPIAQKYLLLVLGRSASALDSMGDAFLSANSCEVLRPQMAETALPGKRMRLLERMVKESSVRSVV |
| Ga0210395_1000002096 | F042478 | GGAG | MVRSPRFSVISISVSALCWLLCSCGSGSAAPAAATEAQNFSCPAGQMDMMQYFVMSQQSRADQFMNGQQNPIYTEVFPDEDFASTGYWFWLKSVTANGFDVKAFDPNYVYLRSTELVWSDNTTFKRFVDDLPVAARCVASNAAGPEIQVADTTFQYYSACSPYKSSNLGTSLNDLDAPVVMDTGGNIGQVSTRVMHYRYNCDSAFQNCVNEEQFFLAIGYGLWQWKHYQNGTLVNSTLINNIEPGSPGGTLPCTQAYQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |