NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10378513

Scaffold Ga0210399_10378513


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10378513 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1181
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004095Metagenome / Metatranscriptome453Y
F026059Metagenome / Metatranscriptome199Y
F083948Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_103785131F026059AGAAGGMTTPVLTLTQPDPNGIPARKKRVLLLDTSQTKRDLRADVMRRLGIDVDCAADILEARSWWRADLYNLVLINVAGETGSRDEFC
Ga0210399_103785132F004095AGGAGMSGINGDKARFNRRRRQKISRRQSNEKMLKTLAEKHLVPPAAQTGKEKVA
Ga0210399_103785133F083948N/ASLEHGGVSVETSTAMSVQVNCIKVEPTSSERTQYDTADLNGTVKVAARKDDVNITQTVALRKATPESNSSQSAAAVVHEGEQVTRDEAAACGAALRPTGAGNGLNAKWLEIAGGAGGGAVVLCLLLCQGPKHTNVSPSQP
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