NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000783

Scaffold Ga0210403_10000783


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000783 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31772
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F001959Metagenome / Metatranscriptome611Y
F008205Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_100007831F008205N/AVNRVAATNNSAGLSELTDDLARQKAVAEGNQAQQNQLAFTNTAFQRQMSALQGLSGLFGVDSNLLGRTLGIPSQLLNVRANASRPGAGFFTSLGSGLGSTLGALPSALF
Ga0210403_1000078316F001959GGAGGMKNLDSVFAAYMAAWAIFFVYYVIIARKAAALRNDIERLKNSASRGK
Ga0210403_100007832F000624N/AMPIHWSTLVAALVPVGVQFVLFLRWLHRRMRNDEIVRAFVRDIATNHLPHIYTALHAIARKQGIEPTEPPLVRFVDLRGHNHRR
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