NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207909_1001404

Scaffold Ga0207909_1001404


Overview

Basic Information
Taxon OID3300020572 Open in IMG/M
Scaffold IDGa0207909_1001404 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6505
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003750Metagenome / Metatranscriptome470Y
F008494Metagenome / Metatranscriptome332N
F008552Metagenome331Y
F009750Metagenome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0207909_10014042F003750N/AMNEEILHRLMQVAIYSGGIVAFWQITKHMPKALYTLLECITVMTFSVLLLTPFSMIIEYILGGNIDTTMMFVGCLATVSLLSTMWMVMVQSSRELQGKKQYQYVVL
Ga0207909_10014045F008494AGAAGMFMNAVGQYTTAIDKTADLNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIIAKREAEYQLETARANESRIKAEVDQIKYIIRALEVKEEA
Ga0207909_10014046F009750N/AMIPKNAIFEPSNTMKEIVTAIYQNGVFKDNKILKPHLTDRIGIRMKFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNIGDDIWDKFKTHYEGNYFYQPF
Ga0207909_10014049F008552N/AMNVMIISFEASANIDTTLFGYFSMQYDQEFFSDIRENLTEISKDDTLSFKLDPEEVKLLQGSYENVKRVISISDVEQNKFTNVFKRKFDTSGFKKFKNVNLHIDKDYFYFTGHHENKDGTKPVEFQSLNFDVRFIESLENKFKSMVN
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