NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207909_1001050

Scaffold Ga0207909_1001050


Overview

Basic Information
Taxon OID3300020572 Open in IMG/M
Scaffold IDGa0207909_1001050 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7813
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015601Metagenome / Metatranscriptome253Y
F054039Metagenome / Metatranscriptome140N
F065787Metagenome / Metatranscriptome127Y
F066790Metagenome / Metatranscriptome126N
F080054Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0207909_100105011F015601GGAGMAGYTKEFLVDAFMSRYVNCDHLSIEKLERLEKMAHDLYDRVGRDQFRVYACLDAEAIREYKTQVTA
Ga0207909_100105018F066790AGCAGGLLKMLSNLMQRVRDMFKPYTLEDFIVDADPKDYKDIQRLESVWHNYQERKLFNNCY
Ga0207909_10010502F065787N/AMRKLEYYEIRETCKLIEYDLKLAGKGKLWVEVYRDEKYEYRALFPDVADWSAVPMTILTHPIHETQTDLS
Ga0207909_10010506F080054GGAGMSTQPNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLRKKKTVPRLFMPKTNI
Ga0207909_10010508F054039GAGMIDISPNYKRLAKILNKTRKSLTQTCHDLGIDVDDIEDHVLVQVIDQCSHCNIWSQQLIKDLDHNPVCPVCVRLTGL
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