NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207909_1000124

Scaffold Ga0207909_1000124


Overview

Basic Information
Taxon OID3300020572 Open in IMG/M
Scaffold IDGa0207909_1000124 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29031
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (16.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021090Metagenome220Y
F024312Metagenome206N
F038998Metagenome164N
F059001Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0207909_100012419F059001N/AMNRLKTQQEKANERYAQESIKPLYAFIIVCVAFLITAILQNI
Ga0207909_100012424F024312N/AMTPLSRLWDLREEVKFWNYKVDTSYPQNASEMINQLNAAKYKLKLHKQLHFPELLDQPKRNYIPYQMLADKFEVFENYLND
Ga0207909_100012426F038998N/AMIVLNICKEEINWKEAKNGKSYANVATDFLKQPDDKGNTHTVWNNQSQEERAEKAKKNYCGRGKQVSYNAPTGKKEFAVNQQESEDDLPF
Ga0207909_10001247F021090N/AMITINQDQIKELEAFINTIPTAYGLPLLQFLGKLNAEQNPPQVQELQTED
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