NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207909_1000006

Scaffold Ga0207909_1000006


Overview

Basic Information
Taxon OID3300020572 Open in IMG/M
Scaffold IDGa0207909_1000006 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)114198
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (57.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007689Metagenome / Metatranscriptome346Y
F011670Metagenome / Metatranscriptome288Y
F024313Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0207909_100000691F024313AGGAGMHTYTKQERLSDIDTNDIGEHIEDFGDETLNKAFGKFCIMDDEMSFHKVLTDEMGYDDDEVDSSHVDIVQKTVEETLKQVNLVFKNLGIALEFKEADMVEYTAYMLTGKGDTEEDMGVRIRRLVDGKTV
Ga0207909_100000694F011670GGAMQISRAEQNVIKYNLEQYRLDQTRMDKQREQDYSKKIEERRLDQIIAERVSRNLRLDLDKGRHIDIEC
Ga0207909_100000699F007689N/AMKLYEATVRGPDGREFKARVGADSAEEARKLLQQLHGPRAVPYLPHIIPS
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