| Basic Information | |
|---|---|
| Taxon OID | 3300020568 Open in IMG/M |
| Scaffold ID | Ga0208598_1000202 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 22JUN2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19139 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (20.93%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006345 | Metagenome / Metatranscriptome | 375 | Y |
| F014839 | Metagenome | 259 | Y |
| F021096 | Metagenome / Metatranscriptome | 220 | N |
| F040589 | Metagenome / Metatranscriptome | 161 | Y |
| F053984 | Metagenome / Metatranscriptome | 140 | N |
| F062696 | Metagenome | 130 | N |
| F064517 | Metagenome / Metatranscriptome | 128 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208598_100020211 | F040589 | N/A | MSIAQTAILASALKGGGSSTPKSQPTSFSESIAQKPIQWLIVGGVVAYAVSKIVGKVVKTAGERSQETAETTTSSDNPWSYKAFLSQNIPAGTNLLTAAKSYAEAKKVYDSLNTYFVDDADIVVGVFAALPSKVQVAQVVQAFETYYKRNMLQYLQEGKKTFDFGSGGLSDALYTRIIENVKRKPKF |
| Ga0208598_100020213 | F021096 | GGAGG | MAAVVSPIINYFLKNNLCKDYTAIEGEMSTLVTLNFPNTGNYQQAYYFASQTMLDGQNCTITALEIVPSTELVTLPTGQTNVDSSILPNGVLYVSNLKRQIIAQIPLTTLVRTNNNGKPTYVWFNDQVWQNCYVEFTSTGFTTTTTPLTFRVYYVNKQKN |
| Ga0208598_100020220 | F014839 | N/A | MYSPKMIPTNEQRIAQMMANENILLSDKLIKLEVENKEMFSRYHKLRRAFNELLEIHDDLRERSGLDYSDKYDWCDKAGLLDDVE |
| Ga0208598_10002023 | F006345 | N/A | MDNKTAKQIVNEALNIAISKGCFGLVEVTNIVEAIKTINAEEHSEFSEITED |
| Ga0208598_100020231 | F053984 | N/A | MENQIIPTENAAVSVASQITNFAELVALSTALEKMEQVLTLTAEYIELEKPAESFRGIYIGTQTMHITDKVTGEEKSMDAVRFLINKQVFINAGVVLVNEIKRAAVTIGTPVEITYLRKEGNTKIYQVTLLG |
| Ga0208598_10002026 | F062696 | N/A | MKTYGTIRIFCICIVGIYLNSCSPQYRLQRLLKNHQYLYENFRYDSIRIENAVVQDSLFFFTKEKDTLYFNNATIYRNADTLRLVQSCPPCTTTITKQILQPTKEYFKEKRYERSLREKLEDAIFPFVIGMLVCALIIKK |
| Ga0208598_10002029 | F064517 | N/A | MARTRTENLYYGKSQQIEADGCFAISFFRPSTSNPVQVNGIPLEAGQTLSIKQNVGDEDWSTYELVFYSGTATNEMHVTKIMPIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |