NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208222_1004162

Scaffold Ga0208222_1004162


Overview

Basic Information
Taxon OID3300020566 Open in IMG/M
Scaffold IDGa0208222_1004162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3610
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F013517Metagenome / Metatranscriptome270Y
F022401Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0208222_100416210F013517N/AMFESLFAAVLPVMKDLLWAAAGALLTYALNKFQFQFN
Ga0208222_10041623F022401GGAMEHPHEPVDAIKGWQDWYKKHRIVAQMDEPLVTKDSRENMHDTTDAVDSAAKAMWMNKAQEHFADTLAEFQYELSGKDLYKAFYKAAYENAEAARKEYEKTKELMDMLRYSNLGQD
Ga0208222_10041629F001018N/AMTQVTQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAKAELESCADLRSEKVDRIYYAMAAHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVRKKELTVEVTTDPEFWHTQERADYCIEEEVTTTKQVVVRSMSGEVLSTRTEPKTVTKILPNLDAIRSAYQEGRQLPTGVKVVQEYSVRSKRIFSEPRMELVSSEYPDELLREDPSTDES
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