NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208597_1007338

Scaffold Ga0208597_1007338


Overview

Basic Information
Taxon OID3300020562 Open in IMG/M
Scaffold IDGa0208597_1007338 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3147
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F005299Metagenome / Metatranscriptome405Y
F008359Metagenome / Metatranscriptome334Y
F011762Metagenome / Metatranscriptome287N

Sequences

Protein IDFamilyRBSSequence
Ga0208597_10073382F003691N/AMNNRMTNEFNQFTEVSYNTSRNERPIYKNFAASKMSQCVKPKSMVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKEATTIKQIISQYPIKLGKVEKRFIAECKRELKQFGLTKKAIDIVLG
Ga0208597_10073384F008359N/AMKSKVNTKSLYEIKKVKRVMRMKSEGFEPTSFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTLGIVKNIMNEIKVK
Ga0208597_10073386F005299N/AMNNTPTHNPHTFDGFDSPRDIWESKVGYDSANKKMIAKVYKHLYNVMEFTTKPSWVKIITEMLIEDNKLGKVSVNGYYSTIRTNLKDIGVIQYNGRKGLSKGKNWDRFFGDEDWSWFITNTNSGGYGIIVK
Ga0208597_10073389F011762N/AMSKIKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDETSVRKYIGELEVETKMDKLETSLIKNVLSKKDKKEVLASKELSDMMPALEVLVDANFRDNNAKRPEDTD
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