| Basic Information | |
|---|---|
| Taxon OID | 3300020555 Open in IMG/M |
| Scaffold ID | Ga0208358_1003883 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 10AUG2009 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3452 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002343 | Metagenome / Metatranscriptome | 568 | Y |
| F003540 | Metagenome | 480 | Y |
| F003785 | Metagenome / Metatranscriptome | 468 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208358_10038834 | F003540 | GGAGG | VNMQKIVDMLFPVLLAAVGWLLTEIASFNNRLMSVESKMPALITPEGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERSK |
| Ga0208358_10038835 | F003785 | GGA | MTSVQELEVTVTSHIDVCAVRYEAIHARLKRLEQLVLKVGGVIIVILLGALGSMGMLLLEALQR |
| Ga0208358_10038836 | F002343 | N/A | VNDIDLKVTLEEAIAIVNLLGSLPTSQGGYPLWAKLKAQVEPLIPKPDEVKQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |