| Basic Information | |
|---|---|
| Taxon OID | 3300020551 Open in IMG/M |
| Scaffold ID | Ga0208360_1000143 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21205 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (87.18%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008237 | Metagenome | 336 | Y |
| F012770 | Metagenome / Metatranscriptome | 277 | Y |
| F014237 | Metagenome | 264 | Y |
| F046323 | Metagenome | 151 | Y |
| F079979 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208360_100014314 | F046323 | GAGG | MSKQFRVTYETKGVKVVNVWLPEGTELPSNWGSMTLREQDEWLYDNQSEAHLNWSDETEGEVVNILPVAELKVVI |
| Ga0208360_100014319 | F008237 | GGAG | VTLEWARIEPWQYVVDAVASEYHRKFSDIELEDIRQSLYQWFLEHPNKLDTWEAIGVKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLTPVLRGEWGQINKMDLGRPGKPSAPNEGGNMMAMMIEIDFAYWKLTKDDRKVLFLRHAEAMDFPDIAKELELGSEDAARMRHKRGIRKLINKIGGFKPYRDEDLEQVVNQEHSPVE |
| Ga0208360_100014322 | F012770 | N/A | VSDETEPPHNYCHECRITFEDSFELVDHYLEDDEEFDPYYILPNGFKLMLGSLLRFMFDHADEPDQIRLITQSTYVTLFASENGYDLVDELVEDMVVKSALQDFDQSLIKLLEEETNDDEGGA |
| Ga0208360_100014325 | F079979 | GAG | MMIREEEDDTTQEMRAFVLLELKRETAALIEKIEAAKVPVTDEWTDGLNAGLAWAVRILNKDKSAS |
| Ga0208360_100014334 | F014237 | AGGA | MDTFKNVLMRIGAVIAAEALGVIGAGSLVGIEVWQAAVLAGALGAARVLEALARFFLNDGSLSADEINAAFAKVDKKASE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |