Scaffold Ga0208856

Basic Information
Taxon OID	3300020548 Open in IMG/M
Scaffold ID	Ga0208856_1000236 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020548 Open in IMG/M

Scaffold ID

Ga0208856_1000236 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23340
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (23.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

23340

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (23.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F101028	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208856_100023624	F027487	N/A	MACFTSLPYRDKTYPFLQTIFAATELSPISFGCYDAATDAVKLYQFYLGFATIGGLTPVAQNCFVQKTEDQQFFLVNEALSAALNPVT
Ga0208856_100023626	F025268	N/A	MASDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQSWPLNHTTEQKAFRFGRGFHDPCTPFRAINDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTVNNEAGYDLCAIRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNAGLAPFNEADPATWARLVRVPRYIKTVMEQGCAYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHTFLHRMPKSKNLYGSCCEVQSYIVPENNQDCYSCAGVGDIVVPS
Ga0208856_10002363	F014513	N/A	MADTLEEMVEVVKGFVGDSGVCSYDRAVKAVNQARRLLWNKRAWSSQEEYVQICCVNDCFTLPARYEQIKLAWIGNESASLADEWFNATNAFALHADHSCHRLITEVGGLHVLFRDYTTRPYQIAVLAENSEDIGVELMFEAQDEYSTYHKVTVTAQAYPSIGKSDVSVRGIRTVSKPVTKGRIRVYAYDATLETKTLIAIYQPNDANPTFRRFKAPRTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLSLAVQEQEKEMAGYEIPTAAPIRFANYSRADNLIGSDLLSPSPNDYFLSR
Ga0208856_10002367	F101028	N/A	MPTEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGINRTRPSIRNIPIIAGDGEAATIVNDILGGNFQGAYPYRATNYRTSDGMLLSVSGIIYFLKIVNNRAFAYKVIEGNDPGMMHTFFVQAEDRAYIQNGYQNAIAWDGVLGTLTASEIQNGDYCEIVSLGDGVTNTNFTLIGAPSNTIGVKFTAIITDTQRGTGTGTVKLPAYRLNPYLAKMPIGTIMEYAFGRVFVSDRFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPELGYNLRGQGQLVVLTGNGAFSMDVSLPRSQWNTSNIQRISLLGRGCTSPNLALVNSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSRDVNKWVSNDTPWMKQFASTIFFDNYLINTVSPQTYRAEGVEGLNRFHRGMVVLDLDQSSTPAPDAQLSFRWNGVWTGIRPTQLLTALIQGEKRGFGFSFDKDNKNRLYEFTTAQGDDYGPNGTRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVDSYVDFRADSNPCWSQLKVPTTFGCDPCSPVVTDCFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208856_1000236

Overview

Ecosystem & Geography

Associated Families

Sequences