| Basic Information | |
|---|---|
| Taxon OID | 3300020547 Open in IMG/M |
| Scaffold ID | Ga0208361_1001625 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4438 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013499 | Metagenome / Metatranscriptome | 270 | N |
| F016116 | Metagenome / Metatranscriptome | 249 | N |
| F083681 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208361_10016252 | F016116 | N/A | MVEKLAKHERLALYNLTEREIDQLEEELVKQFPKEQFAETYIEMWQIHRDTKAIQIYNLIEAKYPGSHNDEKRAGIWFEIATLFPHRLHELVKP |
| Ga0208361_10016253 | F013499 | N/A | MSEALKDIRTTVSGIKGLVMMLQAYQRDLVSKGEPDPSEGSLETARSAINQLKEKIETIVGPEEPTGAEGFEVEVHESEDQSQT |
| Ga0208361_10016254 | F083681 | N/A | MNEQEGIEELDRLKRVASIRKDMCKVIQLLGYRVKVLKLQLALLPSEEKNLIRFQLDNALDETIKVVSKISHNFQKEEKKLILELSHQ |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |