| Basic Information | |
|---|---|
| Taxon OID | 3300020544 Open in IMG/M |
| Scaffold ID | Ga0207937_1004946 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3281 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013610 | Metagenome / Metatranscriptome | 269 | N |
| F018161 | Metagenome / Metatranscriptome | 236 | N |
| F025270 | Metagenome / Metatranscriptome | 202 | N |
| F039492 | Metagenome / Metatranscriptome | 163 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207937_10049461 | F018161 | N/A | MSELESNPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMKELRSLDPEYPVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSDEGKPFPALNSKH |
| Ga0207937_10049462 | F013610 | N/A | METSTSTDNPEKKQEIEKQKTLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVTEDKWDCETNKFLFNEIKDAMMKLKRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV |
| Ga0207937_10049463 | F025270 | N/A | MNQETLENGNTLRSLRVRQATKVSKYKLKRQWQKIAAEALARLNDVKTNEIYTSEHNIAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYNCSLCLPTDDSDYEYEPTSS |
| Ga0207937_10049465 | F039492 | N/A | VTVQKVTEKYTLDEQLPEAKLELGHKANAIRMLSDLDAPLYMHILTLELCKMTQLIRSHVKEQDKESIAHKAYHIIKEIKKKRPKWIFHQNPRAEYNFEKKSLTNGQVYDREILKIKDCRNTCGIVNKVNVKRSFSQNKHVFEELKQMQSIGQEKTPRWVFAYKIPSLPIIKDIDFNFK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |