NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208857_1007898

Scaffold Ga0208857_1007898


Overview

Basic Information
Taxon OID3300020542 Open in IMG/M
Scaffold IDGa0208857_1007898 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1825
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005090Metagenome / Metatranscriptome412N
F011075Metagenome / Metatranscriptome295Y
F056617Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0208857_10078981F011075N/ARYMRSFETHLGIIVGSHLNDAMIEVSINPQLAKKRLKFVKALTFFNEDLTKGVTDDYCDWLWNELFENQRWGGPYIKGTNYETKK
Ga0208857_10078983F005090N/AMKKKMKFVWCGVTFELPAECLRTTDYWGKTLDNPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSATINVCNADGSDLNVASKEWNDIYTFVRQMSAGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENKAPHGSWPSAIKTLRGLIAGEYVFGPLSIEKAIEKAKSYGYSDSTINKVLELV
Ga0208857_10078984F056617N/AMIHRAKYEKLLKNSKGQYRYQFNWVSGGFNDIWAKNLKEFKSELKRQFGNSNLDVDYNTLHKATASGAKSWDTAG
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