NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208722_1012827

Scaffold Ga0208722_1012827


Overview

Basic Information
Taxon OID3300020537 Open in IMG/M
Scaffold IDGa0208722_1012827 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1434
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023520Metagenome / Metatranscriptome209N
F027744Metagenome / Metatranscriptome193N
F028416Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0208722_10128272F027744N/AMNLIAKESNNNSYKLGVGNTSQRINPELPLTTAERDAVARGVVRFNKQRQHRKGRLDNLLEALDTRHGTVYDPGNVEILIEIFNTVRLIKCAFPDKSIKWELPKHRPLPLAESLEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL
Ga0208722_10128273F028416N/AMERQPANGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIFDKVRQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLADYELDC
Ga0208722_10128274F023520N/ARICMATAKERKYVKCCDAKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLVNRILEGVDSIDISKEWNHQDNKSKFVEIKRDMTKLRLCYPLWKLNKYDIEKYSTCLCPNCDSIDVAGGKTLKKLGELTLEL
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