NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208228_1018951

Scaffold Ga0208228_1018951


Overview

Basic Information
Taxon OID3300020535 Open in IMG/M
Scaffold IDGa0208228_1018951 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 25JUL2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1176
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027744Metagenome / Metatranscriptome193N
F050893Metagenome / Metatranscriptome144Y
F085117Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0208228_10189511F050893N/AMEEIIIKIGEIERLVMLLLIQKEKLEEREEADPSKGSIHKTLVAIKQLSKKLEAILDNEKLRTTEELKTEVCEKE
Ga0208228_10189512F085117N/AMEKKSTSKKVDKSQEIASCRKSISETTVLLKEKIQLLTVLFNKLTISERNLIGEELMEVFGNSMRMIHDISQNLEIPVKTSVAKVLFTD
Ga0208228_10189514F027744N/AGQRVNPELPLTIAERDAVARGVVRFNNQRQYRKRRLDNLLEALDTRHGTVYDPGNVEILIEVFNTVRLIKCAFPDKSIKWELPKHRPLPLAESLEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL
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