NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208202_1003115

Scaffold Ga0208202_1003115


Overview

Basic Information
Taxon OID3300020514 Open in IMG/M
Scaffold IDGa0208202_1003115 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2727
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008235Metagenome / Metatranscriptome336N
F016959Metagenome / Metatranscriptome243N
F045698Metagenome / Metatranscriptome152N
F079785Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208202_10031151F079785N/AMKYRIWSKNAQCYTHEPCYPGSSLHCASNYYLDNDGNIVDFVTTIGSNQDDASKCDVDQEAYKIELCTGFKATN
Ga0208202_10031155F045698N/AMNLPTKQPDVIDLTKSIRETHYQLQLDYQALMLKATTLQAENEELKERLNKIAEKIQLDI
Ga0208202_10031156F008235N/AMINYLKNLFKKKTEPETTPVEQPKNNYYLAKYRSNVSLHITYNQLDTDGYHEYRQYENIESDDNLVFLEQKNKKIKEYQETISNINEQLKDNSSEYIMVQKVFLFKKSDFVNANIIIKDNDLYESTN
Ga0208202_10031157F016959N/AVKHKWPTLKARLQHQLKDELTALHQLKSVLPLSKQAQKLYDKLFKKSIQEKD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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