| Basic Information | |
|---|---|
| Taxon OID | 3300020514 Open in IMG/M |
| Scaffold ID | Ga0208202_1001436 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4677 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002260 | Metagenome / Metatranscriptome | 577 | Y |
| F011761 | Metagenome / Metatranscriptome | 287 | Y |
| F028717 | Metagenome / Metatranscriptome | 190 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208202_10014363 | F028717 | AGGA | MDIKNNFVGNDTATGVAQDHEGDDSNEQNVNPGAIRKSTTQSVLAALSNASGVQFQSVEDAIGYMARVGAQTTNGGNAQPVEPQNQQRSNRVTTNDLHEQFQRLQTDLARKDQALREKELDGDIQRAMSDRFDPDLVDYALNKVKSNIQWNDDGTYVIVNSKGQERYGMDGSPLTISGLVNEVAQGNPKLLKQSSSTGGSGLRPGMGQFAGAQDDSIPDYSRDPAAFNAWASRNGLGKRVGLKGMGVTASASTSSRKII |
| Ga0208202_10014364 | F011761 | AGGAG | MAYVLGGGNNEADGFTTAIAGFALRAMHESNGLVNMTNVVTPTQGNEYLVPQFAPITYQDYTPVGNAGTWGTGNANVQNPSLGQGSITATPAVATTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQRVTKAFLSFKATPLNDFYPTSADGFDRVSALGAMELMAAGLPSNTAGWTTGFTTSEVLDLVRLVKQNFKVARMPGAPVIVLDSNGYVQEAVVGSPGGSGSSLTRLLGELTGGAVSQAGGSNLSALGNELLSTGRIESVYGCMIMFTTFLTPTTRVFLGQQSASNCLVGAYFGDSALFTVMKEGLQIKTGETPGGLQMWLTGVGYFGSGVGDGRRGGAINIYQD |
| Ga0208202_10014365 | F002260 | AGGA | MSVPYQRISNATVADIQFYDPAAERRAAALNVDWEPYFKVGSQEWLYKMEFGWWQNYCDTVIGAYYYTNLPNGQLISSFNPNLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDKQNYDFAKMRCDEEWRKAQELSNWYDLFQDAPQGPTTKLEENWTADPNYFNGDRRYF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |