NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208090_1002386

Scaffold Ga0208090_1002386


Overview

Basic Information
Taxon OID3300020513 Open in IMG/M
Scaffold IDGa0208090_1002386 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3456
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010302Metagenome / Metatranscriptome305N
F024955Metagenome203Y
F030063Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0208090_10023865F010302AGCAGMVDVLLNTDDVVVIGPPDSIDLLVDIGPQGVRGSKFIVGSGEPNALTASGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVRTVNFTSGAGSTTIPISNIVTVSGSPLTASNFNVQFQIEGANPIASSMEIPALAGAGTNLVINFDAVQYSGGTWSALTGSKTVHLFISIV
Ga0208090_10023866F024955GAGGMAVENIGNLVPTKIPALADDANIQDALKAYHYGSYDFDTAETDTANLLNPSIAYTINDLQEQIDDQVALELAARDSSRVTTTAPTAAAFTAFSNTIPDGYIWVDKDAAAPVGYISATSVYTATQPTTGLANGVIWIKKGSNPLEMYVYNGDTNAFDQVV
Ga0208090_10023867F030063AGGTGGMPTSFNYDGKPGYIYNVADDTWYELSGKTDTSGTFEWAGLQSYLSAVTMLEALVAKKGINNYLNPAARDASITSPTAGSICVIRQDGSGNVINQLQVYSGSEWIHFIPAQAGKAGKVLQTDGIITSWQDSSGLPELFLLMGG
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