Scaffold Ga0208697

Basic Information
Taxon OID	3300020507 Open in IMG/M
Scaffold ID	Ga0208697_1000778 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020507 Open in IMG/M

Scaffold ID

Ga0208697_1000778 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5110
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5110

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014842	Metagenome / Metatranscriptome	259	N
F038207	Metagenome / Metatranscriptome	166	N
F094975	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208697_10007781	F038207	N/A	MSEVESKKFYEKTSFRVFVFVATIVFIFLIIYFLGYFSSPSKVEIKSPTQAVSYQNNMQKTMDRLKELLLGDNETQEAGKKNEFLEKEIKEIAEKFTMATPSNPSRFERRVKRAAKVGDAVISELLTKIQASVARQEESIEALRVCLKVLLKKGKEGHPSVALIQERVVAHNRESDLCRMLLENVNFLQL
Ga0208697_10007782	F094975	AGAAG	MYCDERVIRFPVQWRGNRYFSLATLLTAANKKVGELYQEYQMQIAPLPNGNLVFEYGTTDPAISIKEFTLMETLLLNYTACYEALNPYVARRRTVHGIQTLILKPESEILASQGQEAHYHYIKTVAAVSLAALIIQDPFFFIPDGFLGSLGFDVDIFVPYLKMPAWITETVVSFQFQAGHNWLLNLKSYEEIMGRVRAGYFHKPSSRRINPLELVSTGKRQALSQEENQSKRPKGTEIQKSHVFANFQMEVLPTEASASVPKMEVDHTEASPSVSRVVEKKETEEEKETICLP
Ga0208697_10007783	F014842	GGA	VTPVKKPRRKAVARKGATLKIQTITTAPPVVAAPVIPTPSTSPLNEEDETSQIPALFQNYSLRMLEELERAKVDRERLLTRESDLLFEIRRLTNRVKELENLAEIGLVDQILSLAQNYKSGGGGSKIVQDALVAAEVSELDVQTHPAYPSRQPESVVYYVQPQNFYQPPEPYRGVRDVVISTSNVVQKRVTNPIPNLSSYQIQNQTHQNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208697_1000778

Overview

Ecosystem & Geography

Associated Families

Sequences