| Basic Information | |
|---|---|
| Taxon OID | 3300020506 Open in IMG/M |
| Scaffold ID | Ga0208091_1000183 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13974 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (40.62%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001732 | Metagenome / Metatranscriptome | 644 | Y |
| F007859 | Metagenome / Metatranscriptome | 343 | Y |
| F009135 | Metagenome / Metatranscriptome | 322 | Y |
| F010081 | Metagenome / Metatranscriptome | 308 | Y |
| F013524 | Metagenome / Metatranscriptome | 270 | Y |
| F024047 | Metagenome / Metatranscriptome | 207 | N |
| F090299 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208091_100018317 | F090299 | N/A | MKKVIVSKVEYEFIIFSLEELYTLSSDETISDKWLSKLEPTKKLFDLELEFYNIRNDGQTPTKKEMVKWLLAKIKNKSLDL |
| Ga0208091_10001833 | F024047 | GGA | MTNVKKSDIVDWLKNVVEKKMVKELDIPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLVI |
| Ga0208091_100018330 | F001732 | N/A | MKKFFTLTIFALLLAGCTTKIVPGQQVSTAQDAVAKQEKKIDQTYDDLVKNDKSKRVQTSVLAQGIQYSLQQVTNAPIQVETAKNLNERVISIVGSPHLDEIKRIKATIDLLNSSLAEERKKGEELLGQRDTVIDKLQKEKSELKDKYDDQLWQMTDKAKEVAKESDAKQATIDSMSGMFGLNAVFWGLKKFFFSCLTAIIIFVVVFALLRILASVHPAAGAAFSIFNMLGSGILSLVKGLTPKAFEMANFASKDKVDEYKSPLTKIVDVIQELKEKQKESPDRVYPLTEVLKRFDKEMDKPEKDLIDDILKEQKWIK |
| Ga0208091_10001835 | F009135 | N/A | MNKPKYYLTVNLPPNFDDVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITVEKVIYRTNED |
| Ga0208091_10001836 | F013524 | AGG | MKTNKEVVARLKEFTNNNCNTTLDPKLCEDIRYLCDEVERFSREIVKANDHMDEDYITIQRYKNKLEKCQQNLSIYESF |
| Ga0208091_10001838 | F007859 | GAG | MKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNRYITYSMIENSTNSVYVVHTNYYRAYYNCDGKIIKTTSNN |
| Ga0208091_10001839 | F010081 | N/A | MQDKIDSIIKKHCLEMQEVDKTKSIPMIVKQLDGIVYTMYRELYGLRDIRSDNYYLNSFTADDKKGHCC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |