NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208484_1005374

Scaffold Ga0208484_1005374


Overview

Basic Information
Taxon OID3300020504 Open in IMG/M
Scaffold IDGa0208484_1005374 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1778
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016925Metagenome / Metatranscriptome243N
F023037Metagenome / Metatranscriptome211N
F023279Metagenome / Metatranscriptome210N
F035195Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0208484_10053741F016925N/AQHIVATNGIIRPVGPTDLRDLMGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLHF
Ga0208484_10053742F023037N/AMNESQYNPSRLTTPAAAKLELISEIQASLNAIDSEESFGYNIQKVMRLYHAIEKLKQIEPFWLFEVRVISAAGTLV
Ga0208484_10053743F035195N/AMEYRTLKTEAEVVELVQNSLNNVETEKSFEDNYEVMLKLFCAIKRLKSIRPKGTFRAVGVSFKQASTPQK
Ga0208484_10053744F023279GAGMADSSKENTEAIVDTIKSELAIGFKNCIDKIDTERKVVDRYNWEIYVKMNKILHNSRRLDPQWAIEGDIGSSWSLRSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRTNNPGWSINKTRRDSPILLTPTQIGLQEENTSQTN
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