NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1002152

Scaffold Ga0208050_1002152


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1002152 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2679
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F002357Metagenome / Metatranscriptome567Y
F007469Metagenome / Metatranscriptome350Y
F009461Metagenome / Metatranscriptome317Y
F037698Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10021522F037698AGGAGMCANHDEMTHQIDWAYQNELRKQWLLDNPDAQYIGWMSI
Ga0208050_10021523F002162N/AMPNYDYMCDGEGSLIVLDLPMDHKIPHCQVCNAPLRRVFTAVPTIFRGTGWAGKDG
Ga0208050_10021524F007469AGGAGGMGELQIIDGSGLTAIFTDDGVKVEPSMVTCDLCNDDRLLHEGDLLRCYSCHAINRIPYHA
Ga0208050_10021525F002357AGGAGMAFNLEDYEDVATLNKWFISNFPSGRSDISVISHDGEKGYILVQATLWRDSKDEQPCVSNIAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESNSSFKEKLESRQNMYGKPGSKSAQIETILRDSFAADKKEPEPVAWSVGDVVDQIGSSIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECPPNWATLTANGKWYFKGGE
Ga0208050_10021527F009461GGAGMKINGITILWFMIATGLLAYAVTLWQTEIYNRGYWRGRATGWDMHRRMITIKQQSDEVFDYDKN
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