| Basic Information | |
|---|---|
| Taxon OID | 3300020495 Open in IMG/M |
| Scaffold ID | Ga0208720_1009296 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 20APR2010 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1235 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038993 | Metagenome / Metatranscriptome | 164 | Y |
| F073107 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208720_10092961 | F038993 | GAGG | MRDRNRAVRKSIPPPVATDVDDAGYVPGVAPISDNGSVDSSLFSRASESEGDIWGNNNYDDDASNAHEGANLVPPDFDGNEGVQPTPNITPAPEGAHRRTRGKVKEYPPAVWRRGADGNNMFALTFGQQEIPPMAQKMSKKRQRLNYKQYRCSIKRSGDMALM |
| Ga0208720_10092962 | F073107 | GAG | MLKTNSMRPVISFTDLLPYMRFGLMKQDAAKETRIVSISAVNPRI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |