| Basic Information | |
|---|---|
| Taxon OID | 3300020483 Open in IMG/M |
| Scaffold ID | Ga0207418_100851 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3337 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F001562 | Metagenome / Metatranscriptome | 670 | Y |
| F009143 | Metagenome / Metatranscriptome | 322 | Y |
| F011299 | Metagenome / Metatranscriptome | 292 | Y |
| F015208 | Metagenome / Metatranscriptome | 256 | Y |
| F015730 | Metagenome / Metatranscriptome | 252 | Y |
| F038205 | Metagenome / Metatranscriptome | 166 | Y |
| F084151 | Metagenome / Metatranscriptome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207418_10085110 | F015208 | N/A | MYKITVANDENAIHWSKEYSDELNAHEEFAKFIDWGFADEYSTINLFTPSGKCYTKIFHRNGKVVKR |
| Ga0207418_10085111 | F011299 | AGG | MMTRKDYIATAEILKYASTKTHPALFSKMVNDFAEMFAKDNERFDVVRFHEASNYTTIFGRV |
| Ga0207418_1008512 | F015730 | AGGA | MLSEKTFNKIVWEYQNGGVVSNHPELTTYERKVLLRYLISLPTVTKVTE |
| Ga0207418_1008513 | F084151 | AGAAG | MTIEYSIWQGSRLLSIGNTATDIKDVDKVIATLNESDTAKKIKFTANIMKVEVK |
| Ga0207418_1008514 | F009143 | GAGG | MMTKWDTIQADVADAYTYLEEEEAYNKALEEGLVIGSTEYDEDELSKSLALDWEDYE |
| Ga0207418_1008516 | F001562 | GAGG | MKSQLEKEIEIKESFDQMLDDSYPDVKIGYSTFTASEILFNCDPIAYQIGLVEHEDYMREEGHID |
| Ga0207418_1008518 | F000447 | AGG | MGYIEIFRMDNEGAGWVDLSEATPDEMLDLEIGLFQEGAL |
| Ga0207418_1008519 | F038205 | AGGA | MGNLIEIIGVACDECGGAGFIFFGDENNYDVESCDCALEIWGM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |