NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208464_100736

Scaffold Ga0208464_100736


Overview

Basic Information
Taxon OID3300020482 Open in IMG/M
Scaffold IDGa0208464_100736 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEPL2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2234
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008745Metagenome / Metatranscriptome328N
F032254Metagenome / Metatranscriptome180N
F040465Metagenome / Metatranscriptome161N
F081269Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208464_1007362F008745GGAMSNGYQITEEERDTLVCPRLECMGAQELLDVWLLPLVLEVGSILEEAYCTSHQLFERGQGEERLLGYLQHQLMTAITELEVVQGWIASSCNMSSDKECRVLDGEEDKSEGKVLKEGSEANQSADQQAD
Ga0208464_1007363F040465N/AMSDKEVDECAQWPEITEEELSFAENLWNRDSSPDEQRLDDWLRVMEEIVATIGYTYHSSFQLLKSNNLKNESLLEALRGMYIFAMAEVNVAKRKTTSS
Ga0208464_1007365F032254N/AMCVRKVGYRVAEKRFVAIPRLPPSHKDAMSKFVVDTLCSNRACRYRQDVPMVQSLAQCTRSCGNPSCFYQSCHVVLVLDPSPKLYRDVLDVYKG
Ga0208464_1007366F081269N/AMEALPVAVSGSLYKSALTMIKELKKLVIKLTREGVSCSPSVIQMFDETKRWFMERIRVHFADSQKRYLQWRWRAAEKMFLQFKDGKPLTSVAATSVVNVAASPTRRPRKRVKVAAPAPSNLTVIPE
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