NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211503_10021539

Scaffold Ga0211503_10021539


Overview

Basic Information
Taxon OID3300020478 Open in IMG/M
Scaffold IDGa0211503_10021539 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4303
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_034
CoordinatesLat. (o)18.49Long. (o)39.8483Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F029567Metagenome / Metatranscriptome188Y
F035963Metagenome171Y
F059346Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211503_100215392F059346N/AMETILHNAWSLFVAIGWFFLNRITAKVDALEKDKADVSAVKANSGLIHEGDKRIDNIQHTSVPRSEYKYDIASLHNRLNEMEKSKEDKIQAIRLIENRKETGGKTK
Ga0211503_100215393F035963AGGAVEKLNELVLATTASFAAMGVWFFKRLFKSIDIAHERIDKLESQQVDRTYLETQLAPIRQDLNIILQHLLENKNNG
Ga0211503_100215395F002078GGAGMDAFMGQEWFQIVGEIVLVFTAITGSLPDRWVQKIPVLSTLWPIFNWLAGNIFNNLNHPKGMAAAKEVEQEIDKAKAEVRERDGLPDVLNGV
Ga0211503_100215396F029567GGAMVFLMCLTGCSSILTEMAAPAANFGLGLYNADDYYSKECMWYEKVEFSPQTKEWLKDNNPPELVVKDLGKVARNNDIYKEVCNE
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Institute for Fundamental Biomedical Research
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