| Basic Information | |
|---|---|
| Taxon OID | 3300020477 Open in IMG/M |
| Scaffold ID | Ga0211585_10029622 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4330 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_125 | |||||||
| Coordinates | Lat. (o) | -8.9103 | Long. (o) | -142.5767 | Alt. (m) | Depth (m) | 140 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011155 | Metagenome / Metatranscriptome | 294 | Y |
| F011704 | Metagenome / Metatranscriptome | 288 | Y |
| F083235 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211585_1002962214 | F011704 | N/A | MNIKKHQELIDLTDYLAISNEYLIRKFKEGGNYLIIDTFGDFFIIERDEVESVFSTIWNDLYGPVLEESPHILN |
| Ga0211585_100296222 | F083235 | GAG | MGVLEGIVWFLPWLTEAWLWEKSVNIAIISTILFAKPRNWCVDYDSSGYDGIFYCL |
| Ga0211585_100296223 | F011155 | GGAG | MIENAVEAVGTFDATMDSLFVVKEAAFGFLTEQKDSPYPWMLAAATVAGALPLALVFFGVGMIESGVLF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |