NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10011066

Scaffold Ga0211585_10011066


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10011066 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8293
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007001Metagenome / Metatranscriptome360Y
F009237Metagenome / Metatranscriptome321Y
F055182Metagenome / Metatranscriptome139Y
F083234Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211585_1001106612F083234N/AMDLKNLHRQMKIQKLEDITQECVHSWPKSEKYSEFSKMTDIIHWLENNEKLSPDGKKFMGDLEHSLVKLFATKYNANISI
Ga0211585_1001106613F055182N/AMPTYQYKCNNCGLEFEETHKIADRHIPCENPKKCGETTSADDTLCDIQIVPQFPSQISMRDSFRRHTSDGWKDRLKEIKRQNPGSNLDV
Ga0211585_100110662F007001GAGMTVKADVEVLKTKIENIESSFDDHVAQNREDFKEVHSRMSTMKREISDEINLTFQKLYDKIDDNEKEIGGLAKWKWTVGGVLLALTFAMTVFSTFWQVHT
Ga0211585_100110667F009237AGGMNKRLKVLKSLIDNGSVPTIHEIAKIDSEEYSYTDLIALEYGFVQDLYIGHGQFEKWFTYTGPEPIKINDLILQPKEMIEFVVTQIYDGIL
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