NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211715_10006196

Scaffold Ga0211715_10006196


Overview

Basic Information
Taxon OID3300020476 Open in IMG/M
Scaffold IDGa0211715_10006196 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7000
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_148b
CoordinatesLat. (o)33.9044Long. (o)-56.7834Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019227Metagenome231Y
F021858Metagenome / Metatranscriptome217Y
F039176Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0211715_1000619613F039176N/AMTYITGGGIDLSLNRSLEELISSYYEAHGAGIELDADTRPEELDAYYTLENYLHDMEAI
Ga0211715_100061965F021858GGAMLDVNKFENRIVKFKRIAAGVESPMEAEIRRIKYDQLAGVPRSVTARFVDPLNAIMTLHYDINLKKFRAPLGPDILESDFDISEYIKSAALGSAHTVIKSPKKNRPKF
Ga0211715_100061969F019227AGCAGMICSYCYDTQINPKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKDRTWMDHKPEAIFGKKKNKTSPNFGKVPKGPKSVTDKQFSSDLGKFMT
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