NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211541_10538991

Scaffold Ga0211541_10538991


Overview

Basic Information
Taxon OID3300020475 Open in IMG/M
Scaffold IDGa0211541_10538991 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)569
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.7738Long. (o)-16.9097Alt. (m)Depth (m)5 to 160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103383Metagenome101Y
F105894Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211541_105389912F105894AGGTGGMKITREQLKEILREELGLLKEVTIKTKSGHKVELDSVGSKLKIYTSRGYIEVNGHKELSQFVNILKKNFRIV
Ga0211541_105389913F103383N/AIEIIKEEYQTILNEKTVRMGDMDIIFQGSDRVQLIGRKGRTALSKMDAKIIISAIRRHIGGI

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