| Basic Information | |
|---|---|
| Taxon OID | 3300020473 Open in IMG/M |
| Scaffold ID | Ga0211625_10024953 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4083 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_122 | |||||||
| Coordinates | Lat. (o) | -8.9632 | Long. (o) | -139.2276 | Alt. (m) | Depth (m) | 115 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001242 | Metagenome / Metatranscriptome | 739 | Y |
| F056887 | Metagenome | 137 | Y |
| F068114 | Metagenome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211625_100249533 | F001242 | N/A | MIKLTGKTNHGKNRIREHGDLWEVLEVPTGVIKMSHKPHFPPIKSVKTGEERWLDDVNFSWIPERF |
| Ga0211625_100249534 | F056887 | AGGA | MAKVTTDEMVALINADITFAAEIGDKEFVGYLKGAKAKLLDEIYPTRHEEYAELFGK |
| Ga0211625_100249537 | F068114 | GAGG | MVELGTKIIGNFGAMIPLSFGEVVTVETFDTGPKDHADVKVKWDNGSHTWMALGEINDAVGKLSPIGYYTEEVYYEN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |