NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10000874

Scaffold Ga0211579_10000874


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10000874 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23542
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (57.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007001Metagenome / Metatranscriptome360Y
F009237Metagenome / Metatranscriptome321Y
F017043Metagenome / Metatranscriptome243Y
F055182Metagenome / Metatranscriptome139Y
F083234Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211579_1000087415F055182N/AMEQTLRMDDRHKPIEEAHKYGTCDDLDSKSCDLQIVPQFLSMVSMRDGWRRHTSDGWKDRLKEIKRTNPGSNIDT
Ga0211579_1000087416F083234N/AMRTKKLENITQECVHSWPKSNLYSEFTKMTDILQWIEKNEKLSPDGKQFMGDLEHSLVKLFATKNNNANISI
Ga0211579_1000087421F009237AGGMIKRLKELKSLIDNGSVPTIYEIAKIDCEEYTYSDLIALDYGFVQDLYIGSGNFEKWFTYTGPEPIKINDLTLQSNEMIEFVVTQIYDGIL
Ga0211579_1000087426F007001N/AMTVKADVEVLKTKIEKIESSFDDHITQNREDFKEVHSRMSSMKREISDEINLTFEKLYDKIDENEKDIGGIEKWKWTLGGVMLALTFAMTVFSTFWAVHT
Ga0211579_100008747F017043AGGAMQGNTKRQGRKHRSPEDVIRENDFLKYKLRDLQKYIRKLEYDNALFQRKQQINYARKNNRHYK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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