NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211614_10001182

Scaffold Ga0211614_10001182


Overview

Basic Information
Taxon OID3300020471 Open in IMG/M
Scaffold IDGa0211614_10001182 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11632
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (97.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088735Metagenome109N
F093706Metagenome106Y
F100929Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0211614_1000118214F088735AGGAGMNIFQDPDFYYNDLTHLITNEIIKQIEAGVSSITGFARWQYPIFIDTDDGFIDWGFDVQYVDNVPGRTFDVWASAGFNEDYIPEVTFTIVLPRGTSLQDAVIDYPELFGSVAHELHHIAQKNEGICEYEGETDNDQVRYYLNPTEIPAFHIGFRAQCALSGADMEAEMRSYLSLQNINSEETELIVEAWMNPSFEIAEENLLS
Ga0211614_1000118217F093706AGGAGMYPKAKYVNIFEAKFVRPNKTGSAGATYATEGDDIITIRLDSIASIHTESIQYSHHKYCMVVLSNGSRYNITETTADEIRLCLDIDDIYKRGEE
Ga0211614_1000118218F100929AGGAGMNYTYRDLLEALQAMSSDELDMSVTVYDRGQEAYHKLNYAGKCEGDDKVNADQPILIINDPEETVSECPPLGAFPTSDVIKQDYLETGLGYPDVRACEIWMEFADGSTLTTDDFLDMDECIETQIRDNFCPENVGGAKIVNFKWKELGI
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