NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211543_10008468

Scaffold Ga0211543_10008468


Overview

Basic Information
Taxon OID3300020470 Open in IMG/M
Scaffold IDGa0211543_10008468 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6154
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5375Long. (o)70.0244Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067645Metagenome125Y
F090993Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211543_1000846810F067645AGGVKVGDVVVLKEDWRIKDVYYGLGVIISIVDYPEEGFTSHKVVWSDTEFSFHATQELELISEA
Ga0211543_1000846819F090993GAGVKVGDLVQVLPARFGHYIIIGRTKMDEDYVGRAVYWDLAPLPDTPFDHGGPMDEKYIEVVSEAR
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Institute for Fundamental Biomedical Research
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