NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211475_10086514

Scaffold Ga0211475_10086514


Overview

Basic Information
Taxon OID3300020468 Open in IMG/M
Scaffold IDGa0211475_10086514 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1647
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_018
CoordinatesLat. (o)35.7392Long. (o)14.3321Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001205Metagenome / Metatranscriptome748Y
F008006Metagenome / Metatranscriptome341Y
F038303Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0211475_100865141F008006N/AMCFVVNGAVECTNYDDSEREIYDSLMRCEKDAEARFYGLTDIFRQYNTPYELIVIGCDESEV
Ga0211475_100865143F001205N/AMFKDVIGKWPTHERFILTSCDDKYFDQYFPRFYKTYTEHWQLPIHLHIIDPSEKSKQRLEQLDLSYTQCITDPAVLKWPYSYVTYCQAQRFILLGFNLLEHQSVIVADVDSYALRTPNQKQKQTLESDMAFTEFNGRLMATFCNFHHSKRGLAKESAVKMQELIEQTDTIGVDQLVIKDTFKALSYNNLKHGEWIRHRDVKTDDDLRQHNECLIYHEKGTRGKNKAVETKWTDIES
Ga0211475_100865144F038303N/ANRTINSQSVSLLNNMNKHDRDEIANRLDLNESSNTYT
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