Scaffold Ga0211676_10071887

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211676_10071887

Scaffold Ga0211676_10071887

Overview

Basic Information
Taxon OID	3300020463 Open in IMG/M
Scaffold ID	Ga0211676_10071887 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2365
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_094
Coordinates	Lat. (^o)	-32.7806	Long. (^o)	-87.0917	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000896	Metagenome / Metatranscriptome	845	Y
F059023	Metagenome / Metatranscriptome	134	Y
F060981	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_100718873	F000896	GGAG	MTNKINMVINLSILALLIYLSVAVKQLQDKVFPDPNIMIPLIGNMDSKTELEYNIRTFLNNALTQAIEEQENQ
Ga0211676_100718875	F060981	GGAGG	MVATMTADVKIRIADLERQKIELNATIERLSYSGNHQRMLELEQEVWEIEDTIRKLMP
Ga0211676_100718876	F059023	AGGAG	MLKTIEKKIQSFVDGIGGIQRQEIVHGTLYVKLDNDRDCDFIHTEIRKFYKEFINPEGGVNMYAVGDEFAFDFVP

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