NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10044341

Scaffold Ga0211676_10044341


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10044341 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3209
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007002Metagenome360N
F087292Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211676_100443413F007002N/AMNDIQATILTLLNSYGDIVELEWDFDVDNIITQLSGNNNWVTGPSISAPQALSLTGSDTLDLRVKDKKEGEYNTNLKSCPSLVEFFDKWNSLAKCHAVKMDAGTFFRPHRDAYKTTQQMRIFIPLNKTELHEWAFIYDKQLAPFKAGKPYLLNTKKQHGSFAFVNDIYHILMGVYINPHNFKVVTDLLPNCRTH
Ga0211676_100443415F087292AGGAGGMNSQHYFKKLDKFAVCAFKAEKGCIEVELKSESCGIYHYVFYGSAKIGKVFESGFEIIKKGDFFSMKDYLYQPRIYEALEDVYVWGFNTFSKQDWDARLLTDETLTVDGESILICLDGKPVVNDITLRRFDYSELSKEKSYDVKLNDGVIALFTRSA
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