Basic Information | |
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Taxon OID | 3300020463 Open in IMG/M |
Scaffold ID | Ga0211676_10006770 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10352 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (84.62%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_094 | |||||||
Coordinates | Lat. (o) | -32.7806 | Long. (o) | -87.0917 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000302 | Metagenome / Metatranscriptome | 1337 | Y |
F000681 | Metagenome / Metatranscriptome | 939 | Y |
F000724 | Metagenome / Metatranscriptome | 919 | Y |
F000896 | Metagenome / Metatranscriptome | 845 | Y |
F003326 | Metagenome / Metatranscriptome | 494 | Y |
F006271 | Metagenome / Metatranscriptome | 377 | Y |
F029115 | Metagenome / Metatranscriptome | 189 | N |
F037814 | Metagenome / Metatranscriptome | 167 | N |
F065936 | Metagenome / Metatranscriptome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211676_1000677010 | F037814 | AGGAGG | MHIEISLGISIFMLLVIIVSFGFALKELKECQKIIKKMQRRSRKYMREVVSND |
Ga0211676_1000677011 | F029115 | AGGAG | MLDKIEKQIIDFTRLTGLAERITMSHGTLYVTLNQPEQCDHFHKVIRTFYVDNINQDGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSDEKYSGKEIMDNTEMGIWSEFAEEELLNNIPADVDTMLDLENDAKEGR |
Ga0211676_1000677012 | F000302 | GGAGG | MVAVMSQDTKDRIAEMERQKIELENQLELLGYSGNLVKMHQIEEEIYEIEDTIRKLLP |
Ga0211676_1000677014 | F000896 | GGAG | MTNKINLVINLSILALLIYLSVAVKQIQDKVFTDPGIMQPAIGYDQSVEMKYNIQTLLNNILIEAINKQENE |
Ga0211676_1000677018 | F000724 | AGGAGG | MPKKEKIWIMGNKGPTGPWVWNVWTKGSKKPLRMVAFDHQHIQDQLEGRQMVKAVKQPEEKDEFSSMPLGPKGSLINRPADYDRGFKILREWIDENGGPPEEIRIKLRELYIDYDRAERKTTRYSARKKKKY |
Ga0211676_100067702 | F006271 | N/A | MMFYGNTPRDIMKMMWRRRFKLLATVMVIAIAVMLMGCTVAGKKVNPPLMVLDKFWDTLGSGVDNTKSKDE |
Ga0211676_1000677021 | F000681 | AGGAG | MYKRDDYYYSVISTEDLYKELNTNYTGETDLVQSLMSRAISNGWVETRHELGVANEELWSLNDWPEGEGFGSSDHYDYDRRIQESIAFERKFIQAETELVQINKLEESPKNDTVRAYMKMNDKLKEGMVA |
Ga0211676_1000677023 | F003326 | N/A | MATVKEKKKLIRTIRNPIRYFRLVFSRYGGEVAMGTITKDQYEYWSDNDGFEEYMGQVDFDADDANKEIPKRAQFDQPFYEYSNICHFSGPEWDDSQTMYIEEVDKDGKPMDDGDGGYVKDIQHDFGDLESLGALIKCTEEHHPNSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLTIEMVNADGFKVFNEVEYDGEVYYLEEDSTGKSSSFYVAKGENV |
Ga0211676_100067704 | F065936 | AGGAG | MATFTLETGLGMLLAGLVVMGIAGTIIYLTVNAMEDHKIKQEKREREKIDGLN |
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