NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211676_10006770

Scaffold Ga0211676_10006770


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10006770 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10352
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F000681Metagenome / Metatranscriptome939Y
F000724Metagenome / Metatranscriptome919Y
F000896Metagenome / Metatranscriptome845Y
F003326Metagenome / Metatranscriptome494Y
F006271Metagenome / Metatranscriptome377Y
F029115Metagenome / Metatranscriptome189N
F037814Metagenome / Metatranscriptome167N
F065936Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_1000677010F037814AGGAGGMHIEISLGISIFMLLVIIVSFGFALKELKECQKIIKKMQRRSRKYMREVVSND
Ga0211676_1000677011F029115AGGAGMLDKIEKQIIDFTRLTGLAERITMSHGTLYVTLNQPEQCDHFHKVIRTFYVDNINQDGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSDEKYSGKEIMDNTEMGIWSEFAEEELLNNIPADVDTMLDLENDAKEGR
Ga0211676_1000677012F000302GGAGGMVAVMSQDTKDRIAEMERQKIELENQLELLGYSGNLVKMHQIEEEIYEIEDTIRKLLP
Ga0211676_1000677014F000896GGAGMTNKINLVINLSILALLIYLSVAVKQIQDKVFTDPGIMQPAIGYDQSVEMKYNIQTLLNNILIEAINKQENE
Ga0211676_1000677018F000724AGGAGGMPKKEKIWIMGNKGPTGPWVWNVWTKGSKKPLRMVAFDHQHIQDQLEGRQMVKAVKQPEEKDEFSSMPLGPKGSLINRPADYDRGFKILREWIDENGGPPEEIRIKLRELYIDYDRAERKTTRYSARKKKKY
Ga0211676_100067702F006271N/AMMFYGNTPRDIMKMMWRRRFKLLATVMVIAIAVMLMGCTVAGKKVNPPLMVLDKFWDTLGSGVDNTKSKDE
Ga0211676_1000677021F000681AGGAGMYKRDDYYYSVISTEDLYKELNTNYTGETDLVQSLMSRAISNGWVETRHELGVANEELWSLNDWPEGEGFGSSDHYDYDRRIQESIAFERKFIQAETELVQINKLEESPKNDTVRAYMKMNDKLKEGMVA
Ga0211676_1000677023F003326N/AMATVKEKKKLIRTIRNPIRYFRLVFSRYGGEVAMGTITKDQYEYWSDNDGFEEYMGQVDFDADDANKEIPKRAQFDQPFYEYSNICHFSGPEWDDSQTMYIEEVDKDGKPMDDGDGGYVKDIQHDFGDLESLGALIKCTEEHHPNSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLTIEMVNADGFKVFNEVEYDGEVYYLEEDSTGKSSSFYVAKGENV
Ga0211676_100067704F065936AGGAGMATFTLETGLGMLLAGLVVMGIAGTIIYLTVNAMEDHKIKQEKREREKIDGLN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.